Installation is not successful because you are missing this dependency, the problem is that latticeExtra is not available for your R version which is very old. 3: In install.packages("UsingR") : installation of package 'SparseM' had non-zero exit status. Can my creature spell be countered if I cast a split second spell after it? Thanks. I'm also a Mac user, and I've trying to solve it as some of you guys have suggested in other similar questions, Error in library("Hmisc"): there is no package called 'Hmisc', How a top-ranked engineering school reimagined CS curriculum (Ep. By clicking Sign up for GitHub, you agree to our terms of service and New replies are no longer allowed. Maybe you can install it manually before installing Hmisc? dependencies survival, latticeExtra are not available, There is a binary version available but the source version is later: Warning in install.packages : 2: In install.packages("UsingR") : installation of package 'Formula' had non-zero exit status. Can corresponding author withdraw a paper after it has accepted without permission/acceptance of first author. By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. Content Discovery initiative April 13 update: Related questions using a Review our technical responses for the 2023 Developer Survey, Can't access User Library in R - "Non-Zero Exit Status" warning, Unable to install 'gdtools' package (I am using Red Hat 5.11), Error in library(qdap) : there is no package called qdap. Thanks. 565), Improving the copy in the close modal and post notices - 2023 edition, New blog post from our CEO Prashanth: Community is the future of AI. Site design / logo 2023 Stack Exchange Inc; user contributions licensed under CC BY-SA. Passing negative parameters to a wolframscript. If installing rpart failed because it had out-of-date dependencies, I'd load them, then try again to install rpart, then try again to install Hmisc. so that .libPaths could find it. What's the cheapest way to buy out a sibling's share of our parents house if I have no cash and want to pay less than the appraised value? The package that was supposed to be installed cannot be loaded (library(package)) neither I can find the package within the folder 3.5. Non-zero exit status when installing packages on R(studio) Interesting. Hi there, I have some problems installing the package Hmisc. to your account, I was able to download and install all dependencies for Hmisc but when it came time to actually install Hmisc it failed. Asking for help, clarification, or responding to other answers. I'll look for a Mac user to give us the general solution. Powered by Discourse, best viewed with JavaScript enabled. To subscribe to this RSS feed, copy and paste this URL into your RSS reader. I couldn't get the solutions above to work, but the problem resolved when I updated to R 4.1.1. Image of minimal degree representation of quasisimple group unique up to conjugacy. also installing the dependency rms, trying URL 'http://cran.rstudio.com/bin/windows/contrib/3.2/rms_4.3-0.zip' Finally, try to install questionr again. @GitKlip I am having exactly the same issue on Windows 10, same error messages and ultimately the installation fails. And the error about CRAN simply would not occur using a standard R + RStudio installation, so I remain suspicious of Anaconda. Hmisc compiled just fine for me after that. I'm not aware of any differences with R for windows 8. gcc -I"/usr/share/R/include" -DNDEBUG -I'/home/yash/R/x86_64-pc-linux-gnu-library/4.2/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-wSz8CH/r-base-4.2.1=. When I tried to manually download and install Hmisc_3.16-0.zip I get the following error: install.packages(pkgs="C:/Users/Erik/Downloads/Hmisc_3.16-0.zip" , lib="C:/Users/Erik/Documents/R/win-library/3.2") Posit Community. To learn more, see our tips on writing great answers. I am trying to get to this package now with R version 3.2.2 (2015-08-14). installing the source package Hmisc, trying URL 'https://cran.rstudio.com/src/contrib/Hmisc_4.4-0.tar.gz' I am able to install Hmisc 4.1-1 source on macos sierra (10.12.6). /private/var/folders/nn/nd8w75lj4595k_rbr05yqms80000gn/T/RtmpphpBfv/downloaded_packages, library(Hmisc) trying URL 'http://ftp5.gwdg.de/pub/misc/cran/src/contrib/tidyr_0.6.0.tar.gz'Content type 'application/x-gzip' length 345733 bytes (337 Kb)opened URL==================================================downloaded 337 KbERROR: dependencies tibble, dplyr are not available for package tidyr* removing /home/username/R/x86_64-unknown-linux-gnu-library/3.1/tidyrWarning in install.packages : installation of package tidyr had non-zero exit status. no .Rprofile defined. binary source needs_compilation Option 1: The clean way - re-install all the packages from scratch. - Checked nearly every page on stackoverflow regarding this problem, version.string Oracle Distribution of R version 3.1.1 (--). There is a binary version available but the source version is later: binary source needs_compilation Hmisc 4.3-1 4.4-0 TRUE Do you want to install from sources the package which needs compilation? Package install looked for and couldn't find: 'http://cran.rstudio.com/bin/windows/contrib/3.2/Hmisc_3.15-0.zip' package C:/Users/Erik/Downloads/Hmisc_3.16-0.zip is not available (for R version 3.2.0). Were I to have known all the packages to install and the order to do so, the R . The warning and error are as follows: PS. Install the development files for liblapack, libblas, and libjpeg. How do the interferometers on the drag-free satellite LISA receive power without altering their geodesic trajectory? Do you have any idea whats the matter here? Then update haven manually. Error in value[[3L]](cond) : Package 'Hmisc' version 4.0.3 cannot be unloaded: Error in unloadNamespace(package) : namespace 'Hmisc' is imported by 'biovizBase' so cannot be unloaded, I did as one might guess Interpreting non-statistically significant results: Do we have "no evidence" or "insufficient evidence" to reject the null? Well occasionally send you account related emails. Reply to this email directly, view it on GitHub Does anyone have suggestions for how the other packages can be permanently fixed to avoid these problems? I am a relatively new R user and am attempting to use rcorr (in Hmisc package for correlation matrix with p-values). (as lib is unspecified) I'd appreciate your help! Why don't we use the 7805 for car phone chargers? Installing R packages had a non-zero exit status : r/Rlanguage - Reddit I can't install packages in R(studio). Warning in install.packages : Error in Hmisc installation for R 3.4.3 #82 - Github What error messages do you receive now? Manually download .zip file from https://cran.r-project.org/web/packages/backports/index.html Does the order of validations and MAC with clear text matter? Making statements based on opinion; back them up with references or personal experience. Thanks! (Yes/no/cancel) y installing the source package . Simple deform modifier is deforming my object, Copy the n-largest files from a certain directory to the current one, Embedded hyperlinks in a thesis or research paper. privacy statement. cannot open URL 'http://cran.rstudio.com/bin/windows/contrib/3.2/rms_4.3-0.zip' I checked /Library/Frameworks/R.framework/Resources/etc/Makeconf the FLIBS flag was as you stated. R Version 3.2.0 to your account. Warning in install.packages : Is there any known 80-bit collision attack? -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o If the details of the particular maze I followed and the place I embarked from help: You signed in with another tab or window. 4: In install.packages("UsingR") : Wonder what the conflict was -- but it is now fixed in that Hmisc compiled.. As an aside, in the world of biological sequence data and the need to analyze, bioconductor is a means by which to get that job done and to scale efficiently. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. Warning in install.packages : Wonder what the conflict was -- but it is now fixed in that Hmisc compiled. call: loadNamespace(name) Since updating RStudio to 1.1.414 Hmisc 4.1-1 now installs from CRAN. How to force Unity Editor/TestRunner to run at full speed when in background? 565), Improving the copy in the close modal and post notices - 2023 edition, New blog post from our CEO Prashanth: Community is the future of AI. Asking for help, clarification, or responding to other answers. library(biovizBase). xcolor: How to get the complementary color. downloaded 727 KB, ERROR: dependency latticeExtra is not available for package Hmisc, The downloaded source packages are in Biological data is diverse and not always consistent, bioconductor is an organized structure of creating systematic tools and enabling the researcher to efficiently get all annotations associated with known or orthologous genomes.! ERROR: compilation failed for package RcppEigen, The downloaded source packages are in I'm using RStudio Version 1.1.423 on Windows 10. rev2023.5.1.43405. > install.packages("tidyr")Installing package into /home/username/R/x86_64-unknown-linux-gnu-library/3.1(as lib is unspecified)Warning in install.packages : dependencies tibble, dplyr are not available. Sign up for a free GitHub account to open an issue and contact its maintainers and the community. By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. Please be sure to answer the question.Provide details and share your research! Updating R may help especially if some of the dependencies that failed to install require newer version of R than you are using. Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide, installation of package error, non-zero exit status, package not found, How a top-ranked engineering school reimagined CS curriculum (Ep. How do the interferometers on the drag-free satellite LISA receive power without altering their geodesic trajectory? Is it safe to publish research papers in cooperation with Russian academics? The text was updated successfully, but these errors were encountered: I'm not sure of a fix yet but I can see that Hmisc imports htmlTable, which imports checkmate, which imports backports. Finally, try to install questionr again. The weird thing is that I have downloaded the big data lite (4.4) image and can install packages without any errors. collect2: error: ld returned 1 exit status What is Wario dropping at the end of Super Mario Land 2 and why? Unfortunately, I am having problems installing Hmisc: @couthcommander: I tried to manually install backports, but received the following error: [UPDATE] A bit more searching led me to a solution: Manually install an older version of backports. error: there is no package called backports. installation of package 'hmisc' had non zero exit status. To subscribe to this RSS feed, copy and paste this URL into your RSS reader. By clicking Sign up for GitHub, you agree to our terms of service and Frank E Harrell Jr Professor and Chairman School of Medicine, Department of Biostatistics Vanderbilt University. R"had non-zero exit status" - privacy statement. What are differences for R for Windows 8? You signed in with another tab or window. Error in library("Hmisc"): there is no package called 'Hmisc' Have a question about this project? Why did US v. Assange skip the court of appeal? Interesting. Not the answer you're looking for? I'm new in R and I've been having some issues installing Hmisc package in order to elaborate a Spearman's correlation heatmap. Does the order of validations and MAC with clear text matter? biocLite("biovizBase") It looks like questionr could not be installed because it depends on labelled, which failed to install because it depends on haven version 2.3.1 or higher, which depends on rlang and vctrs, which could not be updated because they were in use. trying URL 'https://repo.bppt.go.id/cran/bin/windows/contrib/3.4/Hmisc_4.0-3.zip' g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o RcppEigen.so RcppEigen.o RcppExports.o fastLm.o init.o -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR Any help is appreciated as I am trying to solve this problem for days now. Error installing Hmisc package in R Studio - Stack Overflow I get the warning: package F:/Temp/Hmisc_3.16-0.zip is not available (for R version 3.2.2). As an aside, in the world of biological sequence data and the need to analyze, bioconductor is a means by which to get that job done and to scale efficiently. This can be one of the frustrating things about using R on linux. Hmisc 4.1-1 4.4-0 TRUE, Do you want to install from sources the package which needs compilation? Thanks @couthcommander for your response. Site design / logo 2023 Stack Exchange Inc; user contributions licensed under CC BY-SA. C:\Users\user\AppData\Local\Temp\RtmpWGOFzV\downloaded_packages, library("Hmisc") Does anyone know what might has happened? Should I re-do this cinched PEX connection? I haven't seen anything that would suggest Hmisc is at fault. I manually installed backports as shown above and still had the failure. I can't install packages in R(studio) in the cloud. 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